STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3825Major Facilitator Superfamily protein. (451 aa)    
Predicted Functional Partners:
LO55_3827
SMP-30/Gluconolaconase/LRE-like region family protein.
       0.737
LO55_3681
Hypothetical protein.
  
     0.614
LO55_3811
Putative pectinesterase.
  
     0.589
kdgD
kdgD: 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
  
  
 0.587
LO55_185
Hypothetical protein; Glycosyl-hydrolase 97 N-terminal family protein.
 
    0.562
LO55_941
Glycosyl Hydrolase Family 88 family protein.
  
     0.554
sglT
Sodium/glucose cotransporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.528
LO55_3824
Aldehyde dehydrogenase family protein.
     
 0.517
LO55_3822
Bacterial regulatory s, gntR family protein.
 
   
 0.505
LO55_3816
Glycosyl hydrolases 43 family protein.
  
     0.484
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.