Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_3877Isochorismatase family protein. (228 aa)    
Predicted Functional Partners:
LO55_3876
xapX: XapX domain protein.
 
    0.921
LO55_3878
Amidohydrolase family protein.
 
     0.886
uca
Urea_carbox: urea carboxylase.
    
  0.824
LO55_3973
Amidohydrolase family protein.
 
     0.775
LO55_1446
Amidohydrolase family protein.
 
     0.772
LO55_3879
Hypothetical protein.
 
     0.726
gpsA
Ketopantoate reductase PanE/ApbA family protein; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
   0.646
LO55_3025
Aldo/keto reductase family protein.
   
 
  0.617
LO55_5091
Helix-turn-helix family protein.
   
    0.598
LO55_1848
osmo_induc_OsmC: peroxiredoxin, OsmC subfamily protein.
   
    0.545
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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