STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3923SURF1 family protein. (270 aa)    
Predicted Functional Partners:
LO55_543
Cytochrome oxidase assembly family protein.
  
 
 0.956
cyoA
cyoA: ubiquinol oxidase, subunit II.
 
 
 0.953
cyoB
cyoB: cytochrome o ubiquinol oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.943
cyoD
cyoD: cytochrome o ubiquinol oxidase subunit IV.
 
     0.940
cyoC
cyoC: cytochrome o ubiquinol oxidase, subunit III.
 
  
 0.938
LO55_549
Cytochrome c oxidase assembly CtaG/Cox11 family protein.
 
 
 0.929
LO55_3924
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
 
     0.901
LO55_3927
Cytochrome c2.
 
  
 0.868
LO55_3918
Sugar (and other) transporter family protein.
 
     0.849
LO55_3925
Bacterial regulatory, Fis family protein.
 
     0.846
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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