STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_396Glyoxalase-like domain protein. (135 aa)    
Predicted Functional Partners:
LO55_2894
AAA domain protein.
   
    0.763
LO55_2742
Sigma-70, region 4 family protein.
 
     0.666
LO55_3359
Glyoxalase-like domain protein.
  
 
 0.609
LO55_2743
YCII-related domain protein.
 
    0.597
LO55_2744
YCII-related domain protein.
 
    0.586
LO55_397
Hypothetical protein.
       0.541
LO55_905
Surface antigen variable number repeat family protein.
   
    0.539
LO55_395
Hypothetical protein.
       0.538
LO55_1157
Aminotransferase class-V family protein.
  
 
  0.500
LO55_4061
Rhodanese-like domain protein.
  
 
  0.487
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.