STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3967Pyridoxamine 5'-phosphate oxidase family protein. (164 aa)    
Predicted Functional Partners:
LO55_63
csbD-like family protein; Belongs to the UPF0337 (CsbD) family.
  
    0.808
LO55_65
csbD-like family protein; Belongs to the UPF0337 (CsbD) family.
  
    0.808
LO55_2127
Hypothetical protein.
   
    0.654
pnuC-2
NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC family protein.
       0.588
bphP
Bacteriophytochrome.
  
     0.545
LO55_161
GAF domain protein.
  
     0.527
nadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
       0.523
LO55_3433
Eukaryotic DNA topoisomerase I, catalytic core family protein.
 
     0.518
LO55_3965
eamA-like transporter family protein.
       0.517
LO55_2585
Short chain dehydrogenase family protein.
  
    0.502
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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