STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3971Phage integrase family protein; Belongs to the 'phage' integrase family. (387 aa)    
Predicted Functional Partners:
LO55_554
Phosphoribosyl transferase domain protein.
   
    0.630
xerC
Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
 
 
 0.625
LO55_1100
Hypothetical protein; TRSP domain C terminus to PRTase_2 family protein.
   
    0.623
LO55_45
Ketopantoate reductase PanE/ApbA family protein.
  
    0.611
LO55_3970
Hypothetical protein.
       0.551
LO55_2277
Tubulin like family protein.
  
     0.541
LO55_4485
Hypothetical protein.
  
     0.519
LO55_4948
Hypothetical protein.
 
   
 0.494
mdcE
Malonate_gamma: biotin-independent malonate decarboxylase, gamma subunit.
  
  
  0.484
LO55_4490
Penicillin binding transpeptidase domain protein.
  
   
 0.474
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.