STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3987Ring hydroxylating beta subunit. (189 aa)    
Predicted Functional Partners:
LO55_3986
Ring hydroxylating alpha subunit family protein.
 
 0.999
LO55_3989
Putative oxygenase.
 
 0.996
LO55_3990
Rieske [2Fe-2S] domain protein.
 
 0.995
LO55_590
Ring hydroxylating alpha subunit family protein.
 
 0.994
LO55_137
2Fe-2S iron-sulfur cluster binding domain protein.
 
 
 0.905
LO55_3328
2Fe-2S iron-sulfur cluster binding domain protein.
 
 
 0.851
LO55_2012
2Fe-2S iron-sulfur cluster binding domain protein.
  
 
 0.827
LO55_4026
Amidohydrolase family protein.
  
  
  0.785
LO55_4017
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
  
   
 0.775
thcD
Rhodocoxin reductase.
  
 
 0.763
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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