Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_3989Putative oxygenase. (344 aa)    
Predicted Functional Partners:
LO55_3987
Ring hydroxylating beta subunit.
 
 0.979
LO55_3990
Rieske [2Fe-2S] domain protein.
 
     0.879
LO55_137
2Fe-2S iron-sulfur cluster binding domain protein.
  
 
 0.837
LO55_3992
Short chain dehydrogenase family protein.
    
  0.807
LO55_3991
Zinc-binding dehydrogenase family protein.
    
  0.794
LO55_2012
2Fe-2S iron-sulfur cluster binding domain protein.
  
 
 0.791
LO55_3328
2Fe-2S iron-sulfur cluster binding domain protein.
  
 
 0.791
LO55_3988
efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily protein.
       0.773
LO55_4015
4Fe-4S single cluster domain protein.
 
  
 0.759
LO55_4004
Bacterial regulatory s, tetR family protein.
 
  
  0.741
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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