STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4014iclR helix-turn-helix domain protein. (262 aa)    
Predicted Functional Partners:
uca
Urea_carbox: urea carboxylase.
  
 
  0.973
LO55_4013
Putative thiolase.
 
 
 0.809
LO55_1199
Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
 
  
  0.697
LO55_4015
4Fe-4S single cluster domain protein.
 
   
 0.696
paaN
paaN-DH: phenylacetic acid degradation protein paaN.
    
 0.692
LO55_4012
Hypothetical protein.
 
     0.672
LO55_4021
Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
    
  0.657
LO55_4017
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
 
  
 0.632
sucC
succinate-CoA ligase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
  
  
  0.591
aceB
malate_syn_A: malate synthase A; Belongs to the malate synthase family.
    
 0.590
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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