STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_40154Fe-4S single cluster domain protein. (71 aa)    
Predicted Functional Partners:
LO55_3989
Putative oxygenase.
 
  
 0.788
LO55_4017
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
 
   
 0.769
LO55_3987
Ring hydroxylating beta subunit.
 
  
 0.729
LO55_1199
Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
    
 0.717
LO55_4021
Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
    
 0.717
LO55_4034
Carboxymuconolactone decarboxylase family protein.
  
     0.703
LO55_4014
iclR helix-turn-helix domain protein.
 
   
 0.696
LO55_4004
Bacterial regulatory s, tetR family protein.
  
     0.691
LO55_4013
Putative thiolase.
 
  
  0.685
LO55_1932
Malic enzyme, NAD binding domain protein; Belongs to the malic enzymes family.
    
 0.680
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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