Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
LO55_4027Cytochrome P450 family protein. (424 aa)    
Predicted Functional Partners:
LO55_3328
2Fe-2S iron-sulfur cluster binding domain protein.
 0.920
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 0.907
LO55_137
2Fe-2S iron-sulfur cluster binding domain protein.
  
 0.837
LO55_2012
2Fe-2S iron-sulfur cluster binding domain protein.
  
 0.822
LO55_1788
Hypothetical protein; 5'-3' exonuclease, C-terminal SAM fold family protein.
    
 0.813
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.813
LO55_4030
Ecdysteroid kinase family protein.
 
     0.768
LO55_2331
FAD dependent oxidoreductase family protein.
  
 0.750
LO55_2891
6-hydroxynicotinate 3-monooxygenase.
 
 0.749
LO55_2693
Hypothetical protein; Glycosyltransferase family 28 N-terminal domain protein.
  
 0.737
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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