Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4032Oxidoreductase, short chain dehydrogenase/reductase family. (245 aa)    
Predicted Functional Partners:
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 0.916
LO55_4031
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
 
  0.827
LO55_4034
Carboxymuconolactone decarboxylase family protein.
 
     0.825
LO55_4033
coA-transferase III family protein; Belongs to the CoA-transferase III family.
   
  0.822
LO55_4030
Ecdysteroid kinase family protein.
 
 
 
 0.796
LO55_1548
Glutamine amidotransferases class-II family protein.
     
 0.772
LO55_4028
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
    
0.715
LO55_4029
Major Facilitator Superfamily protein.
       0.714
LO55_4240
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.704
LO55_4037
Cytochrome P450 family protein.
 
  0.658
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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