STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4032Oxidoreductase, short chain dehydrogenase/reductase family. (245 aa)    
Predicted Functional Partners:
LO55_4034
Carboxymuconolactone decarboxylase family protein.
 
     0.825
LO55_4033
coA-transferase III family protein; Belongs to the CoA-transferase III family.
   
  0.815
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 0.814
LO55_4031
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
 
  0.801
LO55_4030
Ecdysteroid kinase family protein.
 
 
 0.798
LO55_137
2Fe-2S iron-sulfur cluster binding domain protein.
  
 0.774
LO55_1548
Glutamine amidotransferases class-II family protein.
     
 0.756
LO55_4028
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
    
0.716
LO55_4029
Major Facilitator Superfamily protein.
       0.714
LO55_4240
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.697
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.