Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4033coA-transferase III family protein; Belongs to the CoA-transferase III family. (752 aa)    
Predicted Functional Partners:
LO55_4031
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
 
 
  0.822
LO55_4032
Oxidoreductase, short chain dehydrogenase/reductase family.
   
  0.822
LO55_4034
Carboxymuconolactone decarboxylase family protein.
 
     0.812
icmF
Hypothetical protein; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
 
  
 0.803
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 
 0.792
LO55_1932
Malic enzyme, NAD binding domain protein; Belongs to the malic enzymes family.
     
 0.714
maeB
NADP-dependent malic enzyme.
     
 0.714
LO55_4029
Major Facilitator Superfamily protein.
  
    0.714
LO55_4030
Ecdysteroid kinase family protein.
       0.714
LO55_236
Hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.706
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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