STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4033coA-transferase III family protein; Belongs to the CoA-transferase III family. (752 aa)    
Predicted Functional Partners:
LO55_4031
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
 
 
 0.818
LO55_4032
Oxidoreductase, short chain dehydrogenase/reductase family.
   
  0.815
LO55_4034
Carboxymuconolactone decarboxylase family protein.
 
     0.812
icmF
Hypothetical protein; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
 
  
 0.802
LO55_4029
Major Facilitator Superfamily protein.
  
    0.716
LO55_4030
Ecdysteroid kinase family protein.
       0.714
LO55_4028
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
   
  0.681
paaN
paaN-DH: phenylacetic acid degradation protein paaN.
    
 0.619
LO55_4037
Cytochrome P450 family protein.
 
     0.530
LO55_4024
Hypothetical protein; acyl-CoA dehydrogenase, C-terminal domain protein.
 
 
 0.524
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.