STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4038FAD dependent oxidoreductase family protein. (526 aa)    
Predicted Functional Partners:
LO55_413
Squalene/phytoene synthase family protein.
 
 
 0.954
hpnD
hpnD: squalene synthase HpnD.
 
 
 0.905
hpnC
hpnC: squalene synthase HpnC.
 
 
 0.883
crtY
Lycopene_cycl: lycopene cyclase.
 
 
 0.794
LO55_4040
Bacterial regulatory s, tetR family protein.
 
  
  0.710
LO55_4347
Putative AttH.
  
 
 0.641
LO55_3869
FAD dependent oxidoreductase family protein.
  
  
 0.628
LO55_4278
FAD dependent oxidoreductase family protein.
    
 0.622
ubiA
4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
  
 
 0.615
LO55_4027
Cytochrome P450 family protein.
 
  
 0.592
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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