Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4048Cytochrome C biogenesis transmembrane region family protein. (598 aa)    
Predicted Functional Partners:
LO55_4047
Thioredoxin-like domain protein.
  
 
 0.942
LO55_4049
Prolipodiacylglyceryl transferase family protein.
 
 
 0.910
LO55_4045
Prolipodiacylglyceryl transferase family protein.
 
 
 0.806
LO55_800
Disulfide bond isomerase family protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
  
 
 0.799
LO55_3904
Thioredoxin family protein.
  
 
 0.778
LO55_1492
ahpC/TSA family protein.
  
 
 0.770
LO55_2076
ahpC/TSA family protein.
  
 
 0.770
LO55_3237
DSBA-like thioredoxin domain protein.
  
 
 0.757
msrB
methionine-R-sulfoxide reductase; Belongs to the MsrB Met sulfoxide reductase family.
   
 
 0.721
msrA
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 
 0.718
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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