STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cadA-3ATPase-IB2_Cd: cadmium-translocating P-type ATPase. (763 aa)    
Predicted Functional Partners:
merP
merP: mercuric transport protein periplasmic component.
 
 
 0.885
LO55_4113
Heavy-metal-associated domain protein.
  
 
 0.870
LO55_4056
Cytochrome c family protein.
 
   
 0.816
LO55_4057
Cytochrome C and Quinol oxidase polypeptide I family protein.
 
   
 0.814
LO55_4054
Cytochrome c family protein.
 
     0.802
LO55_4055
Cytochrome c family protein.
       0.705
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
    0.426
LO55_4123
Cupredoxin-like domain protein.
 
    0.424
LO55_529
ABC transporter family protein.
  
 
 0.417
LO55_510
ABC transporter family protein.
  
     0.405
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.