STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4065Hypothetical protein. (168 aa)    
Predicted Functional Partners:
soxB
thiosulf_SoxB: thiosulfohydrolase SoxB.
 
     0.839
LO55_4066
Thioredoxin-like domain protein.
 
     0.807
LO55_4067
Rhodanese-like domain protein.
       0.768
LO55_4064
Beta-lactamase superfamily domain protein.
 
     0.744
LO55_4063
dsrE/DsrF-like family protein.
 
     0.677
soxX
thiosulf_SoxX: sulfur oxidation c-type cytochrome SoxX.
       0.648
cobO
cob(I)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.
     
 0.630
cobB
Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
  
  
  0.584
soxA
thiosulf_SoxA: sulfur oxidation c-type cytochrome SoxA.
 
     0.539
soxY
soxY_true_GGCGG: thiosulfate oxidation carrier protein SoxY.
 
     0.529
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.