Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4065Hypothetical protein. (168 aa)    
Predicted Functional Partners:
soxB
thiosulf_SoxB: thiosulfohydrolase SoxB.
 
     0.838
LO55_4066
Thioredoxin-like domain protein.
 
     0.806
LO55_4067
Rhodanese-like domain protein.
       0.768
LO55_4064
Beta-lactamase superfamily domain protein.
 
     0.743
LO55_4063
dsrE/DsrF-like family protein.
 
     0.676
soxX
thiosulf_SoxX: sulfur oxidation c-type cytochrome SoxX.
       0.648
aceB
malate_syn_A: malate synthase A; Belongs to the malate synthase family.
  
  
 0.578
soxA
thiosulf_SoxA: sulfur oxidation c-type cytochrome SoxA.
 
     0.537
soxY
soxY_true_GGCGG: thiosulfate oxidation carrier protein SoxY.
 
     0.529
soxZ
soxZ_true: thiosulfate oxidation carrier complex protein SoxZ.
 
     0.523
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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