Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4067Rhodanese-like domain protein. (200 aa)    
Predicted Functional Partners:
soxB
thiosulf_SoxB: thiosulfohydrolase SoxB.
 
  
 0.841
LO55_4066
Thioredoxin-like domain protein.
 
     0.821
LO55_1157
Aminotransferase class-V family protein.
  
 0.811
LO55_4064
Beta-lactamase superfamily domain protein.
  
 0.779
LO55_4065
Hypothetical protein.
       0.768
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
   
 
 0.757
soxX
thiosulf_SoxX: sulfur oxidation c-type cytochrome SoxX.
    
  0.684
sodB
Superoxide dismutase [Mn/Fe]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 0.679
LO55_5167
Iron/manganese superoxide dismutase, alpha-hairpin domain protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 0.679
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.675
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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