Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
soxZsoxZ_true: thiosulfate oxidation carrier complex protein SoxZ. (103 aa)    
Predicted Functional Partners:
soxY
soxY_true_GGCGG: thiosulfate oxidation carrier protein SoxY.
 
 
 0.997
soxX
thiosulf_SoxX: sulfur oxidation c-type cytochrome SoxX.
 
  
 0.980
LO55_4075
Oxidoreductase molybdopterin binding domain protein.
 
  
 0.980
soxA
thiosulf_SoxA: sulfur oxidation c-type cytochrome SoxA.
 
  
 0.977
LO55_4074
Cytochrome c family protein.
 
  
 0.973
soxB
thiosulf_SoxB: thiosulfohydrolase SoxB.
 
  
 0.961
LO55_4062
Hypothetical protein; 5'-nucleotidase, C-terminal domain protein.
 
  
 0.937
LO55_4063
dsrE/DsrF-like family protein.
 
    0.852
cysD
cysD: sulfate adenylyltransferase, small subunit.
     
 0.836
LO55_4066
Thioredoxin-like domain protein.
 
     0.811
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.