Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4075Oxidoreductase molybdopterin binding domain protein. (449 aa)    
Predicted Functional Partners:
LO55_4074
Cytochrome c family protein.
 
 
 0.998
soxX
thiosulf_SoxX: sulfur oxidation c-type cytochrome SoxX.
 
 
 0.987
soxA
thiosulf_SoxA: sulfur oxidation c-type cytochrome SoxA.
 
 
 0.983
soxY
soxY_true_GGCGG: thiosulfate oxidation carrier protein SoxY.
 
  
 0.982
soxZ
soxZ_true: thiosulfate oxidation carrier complex protein SoxZ.
 
  
 0.980
soxB
thiosulf_SoxB: thiosulfohydrolase SoxB.
 
  
 0.951
cyt
Cytochrome c-552.
 
 
 0.941
ph
Cytochrome c.
   
 0.933
LO55_4062
Hypothetical protein; 5'-nucleotidase, C-terminal domain protein.
 
  
 0.918
LO55_4054
Cytochrome c family protein.
   
 0.911
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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