Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4080Metallo-beta-lactamase superfamily protein. (232 aa)    
Predicted Functional Partners:
LO55_4079
Methyltransferase domain protein.
       0.723
LO55_4081
Sulfite exporter TauE/SafE family protein.
     
 0.661
LO55_333
Rhodanese-like domain protein.
 
 0.660
LO55_1157
Aminotransferase class-V family protein.
  
 0.644
LO55_1001
4Fe-4S dicluster domain protein.
 
  
 0.628
LO55_4082
Sulfur transport family protein.
       0.595
LO55_4083
Sulfur transport family protein.
       0.595
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 0.573
LO55_4084
Bacterial regulatory, arsR family protein.
     
 0.573
LO55_1245
Rhodanese-like domain protein.
 
 0.565
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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