STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4082Sulfur transport family protein. (145 aa)    
Predicted Functional Partners:
LO55_4083
Sulfur transport family protein.
   
 0.978
LO55_2867
Sulfur transport family protein.
   
 0.861
LO55_4084
Bacterial regulatory, arsR family protein.
 
     0.805
LO55_4081
Sulfite exporter TauE/SafE family protein.
     
 0.726
LO55_4080
Metallo-beta-lactamase superfamily protein.
       0.591
LO55_102
Sulfurtransferase TusA family protein; Belongs to the sulfur carrier protein TusA family.
  
  
 0.571
LO55_4079
Methyltransferase domain protein.
       0.531
LO55_4086
Lycopene cyclase family protein.
 
     0.508
LO55_4085
Hypothetical protein.
       0.431
ccsB-2
cytochr_II_ccsB: cytochrome c-type biogenesis protein CcsB.
       0.406
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.