STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4094vgr_GE: Rhs element Vgr family protein. (919 aa)    
Predicted Functional Partners:
LO55_4598
Hypothetical protein.
 
  
 0.940
LO55_1458
Hypothetical protein.
 
 
 0.931
LO55_59
Hypothetical protein.
 
 
 0.931
LO55_4597
Hypothetical protein.
 
  
 0.897
LO55_4600
Type VI secretion lipofamily protein.
 
  
 0.890
clpV
VI_ClpV1: type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family.
 
  
 0.882
LO55_4602
IV_VI_DotU: type IV/VI secretion system, DotU family domain protein.
 
  
 0.880
LO55_2683
VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein.
 
  
 0.866
LO55_427
VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein.
 
  
 0.866
LO55_4596
VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein.
 
  
 0.866
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.