Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
crtYLycopene_cycl: lycopene cyclase. (394 aa)    
Predicted Functional Partners:
crtI
crtI_fam: phytoene desaturase family protein.
 
 
 0.987
LO55_413
Squalene/phytoene synthase family protein.
 
 
 0.972
LO55_412
Fatty acid hydroxylase superfamily protein.
 
  
 0.953
LO55_408
Polyprenyl synthetase family protein; Belongs to the FPP/GGPP synthase family.
 
 0.885
LO55_409
MGT: glycosyltransferase, MGT family protein.
 
   
 0.862
LO55_4038
FAD dependent oxidoreductase family protein.
 
 
 0.856
LO55_3690
Pyridine nucleotide-disulfide oxidoreductase family protein.
 
 
 0.818
LO55_3486
Pyridine nucleotide-disulfide oxidoreductase family protein; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.800
LO55_101
Electron transfer flavodomain protein.
  
 
 0.770
LO55_4020
Electron transfer flavodomain protein.
  
 
 0.770
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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