Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4103Multicopper oxidase family protein. (463 aa)    
Predicted Functional Partners:
LO55_4102
Outer membrane efflux family protein.
 
     0.939
LO55_4105
Copper binding periplasmic CusF family protein.
 
   
 0.912
LO55_4073
Pseudoazurin: pseudoazurin.
 
 
 0.798
LO55_4554
Outer membrane efflux family protein.
 
     0.793
LO55_4111
Copper resistance B family protein.
  
  
 0.774
LO55_4121
Copper resistance B family protein.
  
  
 0.774
LO55_4104
Hypothetical protein.
 
   
 0.742
LO55_2177
Hypothetical protein.
   
 0.729
tatC
Twin arginine-targeting protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
    
 
 0.698
coxB
coxB: cytochrome c oxidase, subunit II.
     
 0.698
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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