STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4105Copper binding periplasmic CusF family protein. (115 aa)    
Predicted Functional Partners:
LO55_4102
Outer membrane efflux family protein.
 
 
 0.928
LO55_4103
Multicopper oxidase family protein.
 
   
 0.911
LO55_4554
Outer membrane efflux family protein.
 
 
 0.849
LO55_4124
Copper binding periplasmic CusF family protein.
  
  
  0.829
LO55_4104
Hypothetical protein.
 
   
 0.798
LO55_4556
Multicopper oxidase family protein.
 
   
 0.798
LO55_3535
merR regulatory family protein.
   
    0.742
LO55_4844
Rubrerythrin family protein.
   
    0.654
LO55_4106
copC domain protein.
     
 0.651
LO55_4107
Copper resistance D family protein.
     
 0.640
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.