Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
crtIcrtI_fam: phytoene desaturase family protein. (508 aa)    
Predicted Functional Partners:
LO55_413
Squalene/phytoene synthase family protein.
 
 
 0.992
crtY
Lycopene_cycl: lycopene cyclase.
 
 
 0.987
hpnD
hpnD: squalene synthase HpnD.
 
 
 0.967
LO55_408
Polyprenyl synthetase family protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.855
LO55_409
MGT: glycosyltransferase, MGT family protein.
 
   
 0.849
hpnC
hpnC: squalene synthase HpnC.
 
 
 0.845
LO55_412
Fatty acid hydroxylase superfamily protein.
 
   
 0.710
ubiA
4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
  
 
 0.578
LO55_4347
Putative AttH.
  
 
 0.570
LO55_4278
FAD dependent oxidoreductase family protein.
    
 0.538
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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