Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4113Heavy-metal-associated domain protein. (68 aa)    
Predicted Functional Partners:
sodC
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
 0.905
LO55_4095
ATPase-IB1_Cu: copper-translocating P-type ATPase.
  
 
 0.865
cadA-2
ATPase-IB2_Cd: cadmium-translocating P-type ATPase.
  
 
 0.835
LO55_4557
ATPase-IB1_Cu: copper-translocating P-type ATPase.
  
 
 0.835
LO55_3391
ATPase-IB1_Cu: copper-translocating P-type ATPase.
  
 
 0.811
cadA-3
ATPase-IB2_Cd: cadmium-translocating P-type ATPase.
  
 
 0.811
cadA
ATPase-IB2_Cd: cadmium-translocating P-type ATPase.
  
 
 0.786
LO55_3511
Penicillinase repressor family protein.
  
  
 0.706
LO55_4966
Penicillinase repressor family protein.
  
  
 0.706
LO55_2855
Aminotransferase class I and II family protein.
   
   0.626
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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