STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4113Heavy-metal-associated domain protein. (68 aa)    
Predicted Functional Partners:
sodC
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
 0.994
LO55_4095
ATPase-IB1_Cu: copper-translocating P-type ATPase.
  
 
 0.916
cadA-2
ATPase-IB2_Cd: cadmium-translocating P-type ATPase.
  
 
 0.882
LO55_4557
ATPase-IB1_Cu: copper-translocating P-type ATPase.
  
 
0.882
cadA
ATPase-IB2_Cd: cadmium-translocating P-type ATPase.
  
 
 0.870
LO55_3391
ATPase-IB1_Cu: copper-translocating P-type ATPase.
  
 
 0.870
cadA-3
ATPase-IB2_Cd: cadmium-translocating P-type ATPase.
  
 
 0.870
LO55_3511
Penicillinase repressor family protein.
  
  
 0.763
LO55_4966
Penicillinase repressor family protein.
  
  
 0.763
rplN
Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
    
   0.733
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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