Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_41302A0601: heavy metal efflux pump, CzcA family protein. (1050 aa)    
Predicted Functional Partners:
LO55_4129
RND_mfp: efflux transporter, RND family, MFP subunit.
 0.993
LO55_4128
Outer membrane efflux family protein.
 
 
 0.963
czcB
Cobalt-zinc-cadmium resistance protein CzcB; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.859
LO55_4140
RND_mfp: efflux transporter, RND family, MFP subunit.
 
 0.848
czcB-2
Cobalt-zinc-cadmium resistance protein CzcB.
 
 0.844
LO55_3234
RND_mfp: efflux transporter, RND family, MFP subunit.
 
 0.840
LO55_4141
Outer membrane efflux family protein.
 
 
 0.825
LO55_3258
hlyD secretion family protein.
 
 0.818
czcC
Cobalt-zinc-cadmium resistance protein CzcC.
 
 
 0.813
LO55_3233
Outer membrane efflux family protein.
 
 
 0.813
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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