Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4141Outer membrane efflux family protein. (415 aa)    
Predicted Functional Partners:
LO55_4140
RND_mfp: efflux transporter, RND family, MFP subunit.
 
  0.961
LO55_4139
2A0601: heavy metal efflux pump, CzcA family protein.
 
 
 0.948
LO55_4129
RND_mfp: efflux transporter, RND family, MFP subunit.
 
 0.929
czcA
Cobalt-zinc-cadmium resistance protein CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.859
czcA-2
Cobalt-zinc-cadmium resistance protein CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.859
czcB
Cobalt-zinc-cadmium resistance protein CzcB; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.858
LO55_3235
2A0601: heavy metal efflux pump, CzcA family protein.
 
 
 0.856
czcB-2
Cobalt-zinc-cadmium resistance protein CzcB.
 
  0.856
LO55_3234
RND_mfp: efflux transporter, RND family, MFP subunit.
 
  0.849
LO55_4128
Outer membrane efflux family protein.
  
  
 0.828
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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