Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
merPmerP: mercuric transport protein periplasmic component. (91 aa)    
Predicted Functional Partners:
LO55_4150
merT mercuric transport family protein.
 
  
 0.967
merR
merR: Hg(II)-responsive transcriptional regulator.
 
  
 0.915
merA
merA: mercury(II) reductase.
 
   
 0.907
merD
merD: mercuric resistence transcriptional repressor protein MerD.
 
  
 0.906
sodC
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
 0.905
LO55_4095
ATPase-IB1_Cu: copper-translocating P-type ATPase.
 
 
 0.883
cadA
ATPase-IB2_Cd: cadmium-translocating P-type ATPase.
 
 
 0.818
LO55_4557
ATPase-IB1_Cu: copper-translocating P-type ATPase.
 
 
 0.817
cadA-3
ATPase-IB2_Cd: cadmium-translocating P-type ATPase.
 
 
 0.811
cadA-2
ATPase-IB2_Cd: cadmium-translocating P-type ATPase.
  
 
 0.786
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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