STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4172Zinc-binding dehydrogenase family protein. (390 aa)    
Predicted Functional Partners:
LO55_4171
Polyketide cyclase / dehydrase and lipid transport family protein.
 
    0.941
LO55_3452
Hypothetical protein.
 
    0.775
LO55_2012
2Fe-2S iron-sulfur cluster binding domain protein.
  
 
 0.771
fghA
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
  
 
 0.747
LO55_137
2Fe-2S iron-sulfur cluster binding domain protein.
  
 
 0.738
LO55_3328
2Fe-2S iron-sulfur cluster binding domain protein.
  
 
 0.735
LO55_872
FAD dependent oxidoreductase family protein.
 
 
 0.700
LO55_2302
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein.
   
 0.688
ispD
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).
  
 
 0.681
gcvT
Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.
  
 
 0.678
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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