STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4192PC_PLC: phospholipase C, phosphocholine-specific. (747 aa)    
Predicted Functional Partners:
acpA
acid_phos_Burk: acid phosphatase, Burkholderia-type family protein.
  
  
 
0.709
LO55_4194
PEP_exosort: PEP-CTERM -sorting domain protein.
       0.706
clsB
Phospholipase D family protein; Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.
     
 0.628
LO55_4667
Major Facilitator Superfamily protein.
     
 0.627
LO55_590
Ring hydroxylating alpha subunit family protein.
  
 
  0.617
LO55_2435
Putative phospholipase A1; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.
     
 0.611
LO55_1872
HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, IB family protein.
     
 0.610
cls
Bac_cardiolipin: cardiolipin synthase; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.
     
 0.559
cls-2
Bac_cardiolipin: cardiolipin synthase; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.
     
 0.559
LO55_1653
Putative undecaprenyl-diphosphatase ybjG.
    
  0.535
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.