Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fdhEFormate dehydrogenase accessory protein FdhE; Necessary for formate dehydrogenase activity. Belongs to the FdhE family. (339 aa)    
Predicted Functional Partners:
LO55_4197
formate-DH-gamm: formate dehydrogenase, gamma subunit.
 
  
 0.979
LO55_4200
Molybdopterin oxidoreductase Fe4S4 domain protein.
 
 
 
 0.972
fdxH
FDH-beta: formate dehydrogenase, beta subunit.
 
  
 0.970
fdnG
formate-DH-alph: formate dehydrogenase-N alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.963
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
   
 0.957
selB
selB: selenocysteine-specific translation elongation factor.
 
   
 0.952
LO55_4973
Molybdopterin oxidoreductase family protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
 0.702
LO55_3421
formate-DH-gamm: formate dehydrogenase, gamma subunit.
  
  
 0.689
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
   
 0.646
LO55_3419
4Fe-4S dicluster domain protein.
  
  
 0.539
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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