STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4202Patatin-like phospholipase family protein. (625 aa)    
Predicted Functional Partners:
LO55_3911
Patatin-like phospholipase family protein.
  
     0.720
LO55_3226
Type IV secretory system Conjugative DNA transfer family protein.
    
   0.693
LO55_4400
GDSL-like Lipase/Acylhydrolase family protein.
    
  0.547
LO55_4201
Putative lipoprotein.
       0.479
LO55_3108
Hypothetical protein.
 
   
 0.466
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
 
  
 0.461
LO55_3803
Alpha/beta hydrolase family protein.
 
   
 0.458
LO55_4339
Dienelactone hydrolase family protein.
    
 0.410
LO55_3115
Hypothetical protein.
  
     0.409
phbC
Poly-beta-hydroxybutyrate polymerase.
 
   
 0.409
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.