STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4204Hypothetical protein; Glycosyl hydrolase family 3 C-terminal domain protein. (730 aa)    
Predicted Functional Partners:
LO55_874
Beta-lactamase family protein.
 
 
 0.901
LO55_4206
Glycosyl hydrolases 39 family protein.
 
   
 0.806
LO55_1156
Glycosyltransferase 36 associated family protein.
    
 0.763
LO55_4205
Helix-turn-helix domain protein.
       0.762
LO55_4211
Glycosyl hydrolases 31 family protein; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.737
LO55_81
Hypothetical protein; Glycosyl hydrolase family 3 N terminal domain protein.
  
  
 0.711
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
  
 0.674
glk-3
Glk: glucokinase; Belongs to the bacterial glucokinase family.
 
 
 0.672
glk-4
Glk: glucokinase; Belongs to the bacterial glucokinase family.
 
 
 0.669
glk-5
Glk: glucokinase; Belongs to the bacterial glucokinase family.
 
 
 0.664
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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