Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4205Helix-turn-helix domain protein. (431 aa)    
Predicted Functional Partners:
LO55_4206
Glycosyl hydrolases 39 family protein.
    
  0.820
LO55_1548
Glutamine amidotransferases class-II family protein.
    
 0.768
LO55_4204
Hypothetical protein; Glycosyl hydrolase family 3 C-terminal domain protein.
       0.762
LO55_4203
tonB-Xanth-Caul: TonB-dependent receptor family protein.
 
     0.752
LO55_4472
Kinase domain protein.
   
 0.666
LO55_3826
Hypothetical protein.
  
     0.640
LO55_4210
GDSL-like Lipase/Acylhydrolase family protein.
  
     0.624
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.612
LO55_2679
Helix-turn-helix domain protein.
 
 
 0.558
ribB-2
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.558
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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