STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4237Aminomethyltransferase folate-binding domain protein; Belongs to the GcvT family. (352 aa)    
Predicted Functional Partners:
iscA
iscA: iron-sulfur cluster assembly protein IscA; Belongs to the HesB/IscA family.
 
 
 0.811
LO55_4238
Hypothetical protein.
       0.801
LO55_4239
NRDE family protein.
       0.801
erpA
Iron-sulfur cluster assembly accessory family protein; Required for insertion of 4Fe-4S clusters.
 
 
 0.793
mltG
yceG-like family protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
       0.592
holB
holB: DNA polymerase III, delta' subunit.
 
   
 0.507
ftsL
Cell division protein FtsL; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
  
   
 0.486
mreD
shape_MreD: rod shape-determining protein MreD.
  
   
 0.483
holA
holA: DNA polymerase III, delta subunit.
  
    0.460
LO55_2840
Tetratricopeptide repeat family protein.
  
     0.439
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.