Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4241Short chain dehydrogenase family protein. (260 aa)    
Predicted Functional Partners:
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 0.916
LO55_4240
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 
0.856
LO55_1548
Glutamine amidotransferases class-II family protein.
     
 0.772
LO55_4242
Stress responsive A/B Barrel domain protein.
       0.665
LO55_694
Short chain dehydrogenase family protein.
  
 
  0.662
paaN
paaN-DH: phenylacetic acid degradation protein paaN.
  
 0.615
LO55_137
2Fe-2S iron-sulfur cluster binding domain protein.
  
 0.607
LO55_1621
Therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family protein.
    
  0.605
LO55_2630
Therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family protein.
    
  0.605
fabD
fabD: malonyl CoA-acyl carrier protein transacylase.
 
 0.589
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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