STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4249Intracellular septation A family protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family. (211 aa)    
Predicted Functional Partners:
msrB
methionine-R-sulfoxide reductase; Belongs to the MsrB Met sulfoxide reductase family.
  
    0.854
LO55_4250
bolA-like family protein; Belongs to the BolA/IbaG family.
  
    0.831
selO
Hypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.
       0.623
LO55_990
Tim44-like domain protein.
  
    0.578
LO55_4251
PPIC-type PPIASE domain protein.
       0.570
secB
Protein-export chaperone SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
  
     0.520
thrB
thrB_alt: homoserine kinase; Belongs to the pseudomonas-type ThrB family.
  
     0.499
LO55_4252
PPIC-type PPIASE domain protein.
       0.451
LO55_2368
Spermine/spermidine synthase family protein.
  
     0.450
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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