STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4251PPIC-type PPIASE domain protein. (259 aa)    
Predicted Functional Partners:
yfgL
Outer membrane assembly lipoprotein YfgL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.684
LO55_4532
PEP_exosort: PEP-CTERM -sorting domain protein.
   
 
 0.684
LO55_2133
Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein.
   
 0.580
cyp18
Peptidyl-prolyl cis-trans isomerase cyp18 domain protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.580
LO55_4576
Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.580
LO55_4250
bolA-like family protein; Belongs to the BolA/IbaG family.
  
    0.573
LO55_4249
Intracellular septation A family protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
       0.570
LO55_4265
PPIC-type PPIASE domain protein.
  
     0.570
msrB
methionine-R-sulfoxide reductase; Belongs to the MsrB Met sulfoxide reductase family.
     
 0.569
LO55_4252
PPIC-type PPIASE domain protein.
 
    
0.560
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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