Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4261ABC transporter family protein. (213 aa)    
Predicted Functional Partners:
LO55_4262
GDSL-like Lipase/Acylhydrolase family protein.
 
 
   0.940
LO55_2574
ftsX-like permease family protein.
     0.922
LO55_2423
ftsX-like permease family protein.
 
 
 
 0.871
rplL
Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
    
   0.769
tsaD
tRNA threonylcarbamoyl adenosine modification protein TsaD; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
     0.602
selU
tRNA_sel_U_synt: tRNA 2-selenouridine synthase; Belongs to the SelU family.
       0.583
LO55_2954
GDSL-like Lipase/Acylhydrolase family protein.
   
   0.553
LO55_3156
GDSL-like Lipase/Acylhydrolase family protein.
   
   0.553
LO55_3676
GDSL-like Lipase/Acylhydrolase family protein.
   
   0.553
LO55_3679
GDSL-like Lipase/Acylhydrolase family protein.
   
   0.553
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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