STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpnDhpnD: squalene synthase HpnD. (277 aa)    
Predicted Functional Partners:
LO55_4278
FAD dependent oxidoreductase family protein.
  
 0.984
crtI
crtI_fam: phytoene desaturase family protein.
 
 
 0.954
LO55_2208
Methyltransferase regulatory, predicted domain protein.
    
 0.946
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
    
 0.916
LO55_412
Fatty acid hydroxylase superfamily protein.
 
 0.915
LO55_4038
FAD dependent oxidoreductase family protein.
 
 
 0.905
LO55_222
Fatty acid hydroxylase superfamily protein.
  
 0.891
LO55_3690
Pyridine nucleotide-disulfide oxidoreductase family protein.
 
 
 0.886
gap
GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.871
LO55_61
matE: MATE efflux family protein.
   
 
 0.868
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.