STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4312Iron-containing redox enzyme family protein. (487 aa)    
Predicted Functional Partners:
LO55_4731
Methyltransferase small domain protein; Belongs to the methyltransferase superfamily.
 
    0.767
pulA
Alpha-1,6-glucosidase; Pullulanase-type domain protein; pullul_strch: alpha-1,6-glucosidases, pullulanase-type domain protein; Belongs to the glycosyl hydrolase 13 family.
   
    0.665
LO55_956
Hypothetical protein.
   
    0.639
LO55_1396
mgtC family protein.
   
    0.586
LO55_5133
mgtC family protein.
   
    0.586
ligD
NHEJ_ligase_prk: DNA ligase D.
  
    0.566
cphA-4
Cya_phycin_syn: cyanophycin synthetase.
       0.549
LO55_1926
pncC_: amidohydrolase, PncC family domain protein; Belongs to the CinA family.
   
    0.520
LO55_2698
Response regulator.
  
     0.506
LO55_4313
Thiamine pyrophosphate enzyme, central domain protein; Belongs to the TPP enzyme family.
       0.487
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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