Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4315Amino acid permease family protein. (454 aa)    
Predicted Functional Partners:
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
 0.775
LO55_2311
Alpha amylase, catalytic domain protein.
   
 0.729
amy1.2
Alpha-amylase type B isozyme.
    
 0.727
cdase
Cyclomaltodextrinase; Belongs to the glycosyl hydrolase 13 family.
    
 0.727
LO55_2303
Alpha amylase, catalytic domain protein.
    
 0.727
pheA
CM_P2: chorismate mutase.
   
 0.610
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
   
 0.526
LO55_4314
Isochorismatase family protein.
       0.516
LO55_5088
CBS domain protein.
    
 0.491
LO55_2590
ATPase_P-type: HAD ATPase, P-type, IC family protein.
 
 
 
 0.487
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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