Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_432tonB-dependent Receptor Plug domain protein. (1138 aa)    
Predicted Functional Partners:
LO55_377
Dienelactone hydrolase family protein.
  
   
 0.759
LO55_317
tonB dependent receptor family protein.
  
     0.738
LO55_318
tonB dependent receptor family protein.
  
     0.731
LO55_1596
tonB dependent receptor family protein.
  
     0.725
LO55_4580
Putative membrane protein.
  
     0.705
LO55_4966
Penicillinase repressor family protein.
  
  
  0.682
LO55_3704
tonB dependent receptor family protein.
  
     0.670
LO55_3326
tonB dependent receptor family protein.
  
  
  0.666
LO55_1128
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
  
     0.639
LO55_1525
tonB dependent receptor family protein.
  
  
  0.622
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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