Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LO55_4347Putative AttH. (355 aa)    
Predicted Functional Partners:
LO55_4346
ftsX-like permease family protein.
     0.970
LO55_2423
ftsX-like permease family protein.
 
  
 0.823
LO55_4345
Hypothetical protein.
       0.789
LO55_4343
Hypothetical protein.
       0.753
LO55_4344
FAD binding domain protein.
       0.753
wrbA-2
NAD(P)H:quinone oxidoreductase, type IV; flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV; Belongs to the WrbA family.
       0.741
LO55_4348
ABC transporter family protein.
 
     0.718
LO55_3690
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
 
 0.570
LO55_4038
FAD dependent oxidoreductase family protein.
  
 
 0.570
crtI
crtI_fam: phytoene desaturase family protein.
  
 
 0.570
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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