STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4354Hypothetical protein; orn/Lys/Arg decarboxylase, N-terminal domain protein. (752 aa)    
Predicted Functional Partners:
LO55_1139
AAA domain family protein.
    
 
 0.882
LO55_30
AAA domain family protein.
    
 
 0.882
LO55_2040
Sigma-54 interaction domain protein.
    
 
 0.751
astC
Succinylornithine transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.747
argH
argH: argininosuccinate lyase.
     
 0.690
efp
Elongation factor P (EF-P) OB domain protein; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
 
   
 0.687
LO55_3139
Efp_adjacent_2: conserved hypothetical protein, PP_1857 family.
  
     0.684
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.673
LO55_1332
Hypothetical protein; Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
 0.673
LO55_314
Carbon-nitrogen hydrolase family protein.
    
 0.670
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.