STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4359Dioxygenase family protein. (191 aa)    
Predicted Functional Partners:
LO55_137
2Fe-2S iron-sulfur cluster binding domain protein.
 
 
 0.845
purB
purB: adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.763
LO55_2673
Carboxymuconolactone decarboxylase family protein.
  
 
 0.755
LO55_25
Catalytic LigB subunit of aromatic ring-opening dioxygenase family protein.
 
  
 0.743
LO55_4358
Thioesterase domain protein.
    
 0.694
LO55_3112
pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit.
  
 
 0.667
LO55_3506
pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit.
  
 
 0.667
atoD
Acetate CoA-transferase subunit alpha.
  
 
 0.662
LO55_3505
pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit.
  
 
 0.662
LO55_2012
2Fe-2S iron-sulfur cluster binding domain protein.
  
 
 0.604
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.