STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4367tatD related DNase family protein. (266 aa)    
Predicted Functional Partners:
lolD
Liporeleasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
 
 
   0.845
LO55_4369
lolCE: liporeleasing system, transmembrane, LolC/E family protein.
  
    0.757
LO55_4370
lolCE: liporeleasing system, transmembrane, LolC/E family protein.
  
    0.659
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
 
  
 0.533
LO55_2123
ATPase associated with various cellular activities family protein.
 
     0.517
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
   0.508
fliE
fliE: flagellar hook-basal body complex protein FliE.
    
 
 0.502
fliE-3
Flagellar hook-basal body complex FliE family protein.
    
 
 0.502
fliE-2
fliE: flagellar hook-basal body complex protein FliE.
    
 
 0.502
LO55_4371
Hypothetical protein.
       0.491
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.